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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Cucumis melo subsp. melo
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Euonymus alatus
,
Euphorbia esula
,
Fagus sylvatica
,
Fragaria vesca
,
Fragaria x ananassa
,
Glycine soja
,
Glycyrrhiza uralensis
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Hevea brasiliensis
,
Humulus lupulus
,
Jatropha curcas
,
Juglans hindsii x Juglans regia
,
Limnanthes alba
,
Linum usitatissimum
,
Lotus japonicus
,
Manihot esculenta
,
Medicago sativa
,
Paullinia cupana var. sorbilis
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Prunus armeniaca
,
Prunus persica
,
Quercus petraea
,
Quercus robur
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Trifolium pratense
,
Tropaeolum majus
,
Vitis shuttleworthii
,
Bruguiera gymnorhiza
,
Cajanus cajan
,
Carica papaya
,
Cicer arietinum
,
Citrus clementina
,
Glycine max
,
Arabidopsis thaliana
,
Vigna unguiculata
,
Vitis vinifera
,
Medicago truncatula
,
Brassica oleracea
,
Populus trichocarpa
,
Phaseolus vulgaris
,
Ricinus communis
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST040679
species:
Medicago truncatula
miRNA family:
MIR169
source:
miRBase, original name:
mtr-MIR169b
(
MI0001742
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA
miRNA*
GGCCAGTTGTCCTTGGCTATG
mismatches:
5
bulges:
0
View larger
pre-miRNA
AAGAGGCAGAGAGAGTAATG
CAGCCAAGGATGACTTGCCGA
CAACGTTGGCGAATGTTCATGTGATTTCTGCCTCATTGTGCC
GGCCAGTTGTCCTTGGC
TATG
TTAGTCTCTCATCTTCT
dot-bracket secondary structure
.(((((..((((((.((((.
.(((((((((..(((.((((.
((.....((((((...((....)).))).)))......)).)
))).)))..))))))))
)..)
))).))))))..)))))
SIMILARITIES
miRBase
mtr-MIR169a
:
1e-59
PMRD
mtr-miR169b
:
2e-64
microPC
miR169
:
0.00002
UniProt
no hits
RFAM
MIR169_2: 0.000007
Identical with:
mtr-miR169b
from PMRD (
MNEST048718
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454, Northern
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"