mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGGACGGAGGGAGTAAC TACTCCCTCCGTCCCAAAATA TTCACCAAACTAGTACTCCCTCCGTCCCAAAATAACTGTCTCAAGCTTAGTACAATTTTATACTAGAGCTAGTACAAAGTTGAGACACTTTTTTGGGACGGAGGGAGTAACTTTTATAACT GGGAGGCCCAAAGTAAAGCGAAGCCACCAAGTGCAGTTATATATCATCACCAACAGGATTGTTGATTACAATATTACATGGAGGTCTCTGGAAGGTGCAATTCTGTTTCACCGTCAGGCAACAAATGCAGCATGCTTTCTGATTGACAGATCAAGTAGTGGAAACCTAAGTATCATTCGCGGGAACTGTCAAGAGTTAGGAGCTTCTCTCCGTTAATTATGAGCTGACGGCTTGAAGAGTTGAAGGATAATAGATTCTGGTAGTAACTTGCTTGAGTTGCAGGCACACATCTTTCTTCATTCGACTGCTTGTCATCAGTGCTGTACTACCATCACAGGTACCACCTGAAGAGATGGACAGTGTTGAGATGACAGGCACCAAAGGGACATTTCACCAAACTAGTACTCCCTCCGTCCCAAAATAACTGTCTCAAGCTTAGTACAATTTTATACTAGAGCTAGTACAAAGTTGAGACACTTTTTTGGGACGGAGGGAGTAACTTTTATAACTAAATATAGTTAAATCCTGATTTACGGGCAAGGCATATTTTCCGGCTTATGAAAGGGAATGTACAACTAAGGTTGATCTGACGTGTTAAACAATTTGCCTGACAAGAATGTTGTGTAGTGTAAAATGTAATGATTGTACCTGTACAAGAAGTTTTTT 2 0 3' arm Hordeum_vulgare mirnest MIR1122 4e-32 osa-MIR818d 0.000002 -49.4 .............(((((((((((((((((((.((.((((((((.(((.((((..(((((...)))))...)))).))))))))))).)))))))))))))))))))))............ (-49.4)