mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCTGTCCCAAAATAAGT TTATTTTGATACGGAGGGAGT CAGTAGAAGTTCGGCATACTCCCTCTGTCCCAAAATAAGTGTCACAAATTTATAACTAAATTAGTACAAATTTTATACTAAATCAGCGACACTTATTTTGATACGGAGGGAGTACAAAACTATTATCTC GCTCGAGTTTTTTTGGTTTTTTTTTTAATACGAATATCGTTCTAGATTTTACTCTTTGGATTCATAGGTTTAGAGAGACCACGGTCTTGGCATCAATATACCTGTTCTCACACATCATCATAACCTTGCAACTTCTTCTAGAATGACACCAGGAAATGACAACATTGCACCTATCATTATTTGATTTCTACTAGAAGCAAGCTGCAGTAGAAGTTCGGCATACTCCCTCTGTCCCAAAATAAGTGTCACAAATTTATAACTAAATTAGTACAAATTTTATACTAAATCAGCGACACTTATTTTGATACGGAGGGAGTACAAAACTATTATCTCCAGAGAAAGACATGAGGAAACTTCGCAATGAAGAAAATCACCACTTTAGAGCCCATCATTTCTTATCCTCTCTAAGGACGACATAGTTGTGGCCGTTTGTCTTCTGTATCTTTGAAATTTTCTTCAGAATTTCAGCGAAGGCATTCTTGTCCTCTGGACCTCGTAGTCTAGACTTAAATCTGGACACTAAATCTTGTGTGGTGACAGGAGCCACTGCAAGAAGAACAGTCCTGATCTCATCCTCTGTCACAGGAGATACATTGGCACTTTTCAATGAAGCACAGGCCTTTGGTGTAGGTTTTGATGAAGCCGGTGTCTCGTCTTTGATACTTGATGTTTTTGTATCAGATTCCACCTTTGCTTTCTTTGAAGCTGCACCACTAGATGATTTGGCATCATCACCACCTGATTTCCTCTTTTGCTTGGATTTCGATGCAGGAGGTGTACTACG 2 0 5' arm Hordeum_vulgare mirnest MIR1122 3e-54 osa-MIR1862d 0.00002 -36.7 ..((((.((((.....((((((((((((..(((((((((((((....(((((.....(((((......))))).....)))))....)))))))))))))..))))))))))))...)))).))))... (-36.7)