mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCCGTTCCTAAATATAAGAC CTTATATTTTGAAACGGAGGG TCCATCACTTTCATCTACTTCCTCCGTTCCTAAATATAAGACATTTTAGGAATTGTACTATAAACCACATACGGATGTACATAGACATATTTTAGAGTATAGATTCATTCATTTTCCTCCGTATGTAGTCTTCTAGTGAAATACCTAAAAGGTCTTATATTTTGAAACGGAGGGAGTACCTTACATGTTTCT AGTACAAATCATGTACTAAATTGTGCTTCTGGAACAGTTACACAAGTGTAAATTGCGTCTCTCTTTCATTCCATTACAAATTTTAAAAACAGAGAAATGCATCCATTGCAAGCTCCCATCGCTGAAGTGATTTGCACAGCCTCAAGTAGTGCCAGGGCTTCACAACGTAGAGGCTCCGGACAACACTGACTTCTCCATCACTACCCTCGTCATAGGACATATCATCATCACTCTCAAAATATGGTGTTTCATCTCCATCACTTTCATCTACTTCCTCCGTTCCTAAATATAAGACATTTTAGGAATTGTACTATAAACCACATACGGATGTACATAGACATATTTTAGAGTATAGATTCATTCATTTTCCTCCGTATGTAGTCTTCTAGTGAAATACCTAAAAGGTCTTATATTTTGAAACGGAGGGAGTACCTTACATGTTTCTGGGACAATAAAACTGTTTAGCACATTGCAAGTCTTTCCATTTTCTTCCCCAAGCATCTTCTTTCTTTTGTTCTCCTTGAATTCTTGAGCATATTTTCTGTACTCAATTACCTCATCATCATCTGCGGAACTGTTGCTCTCTGTTGGAGGAACATCATAATCACTGTCACTATCACTATCTGCACTAGCCACAAATGATTTTTAAGGCCTGAAAACTGGTAGTTTTGACACCTTGCCACACTGCTGAATTTCCTCT 3 0 5' arm Hordeum_vulgare mirnest MIR1122 4e-67 tae-MIR1122 2e-19 -56.2 ...............(((((((((((((...(((((((((((.(((((((.(((.(((((.((((.((((((((((((((.((((.....))))..)))))................))))))))).)).)).))))).))).))))))).)))))))))))...))))))))))))).............. (-56.2)