mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATCTTTAGTCCCGGTCCGTG CGAACCGGGACTAAAGGGCCT CAAAATCTGAAAATCTTTAGTCCCGGTCCGTGTAACGAACCGGGACTAAAGGGCCTGCCCCTGG ATCTTATATATATATATATATATGCATAATTATTTCTATTTAAATTATATTAAAACTATTTCCCGAACACCAAACGAGGCATCACGTTAATCTCCCGAACACCTAAACCCTAAAACCCAAAAATAATTTCATTCAAAAAAAAACCCAAAAACCAGCAAAATCTGAAAATCTTTAGTCCCGGTCCGTGTAACGAACCGGGACTAAAGGGCCTGCCCCTGGGGCGCTACGAGGCGCCCACGTGGAGCACCTTTAGTCCCGGCTTGTAAGAGGGCCGGGACGAAAGGTTAGGCCTTTAGTCCCGCCCCTTTAGTCCCGGTTGGTGAACCGGGACTAAAGCCCCTTACGGGCCTGGGCTAAAGGCCCCGTCCCCACTAGTGGTGGAAGAATGAGTTGAAAACGTTTGTCGACAAAGAAGAGACACCAGAATTCACCGGCCGGTTTGAGAAGATCGGAGATCAATGACCCGCATTTGTGGCCCACAAGACATTGGAAAAGAGTAAGAAGATGTCAGCGACAAACAAGAAAATGCTACGAAGAAGAAGCATCACCATCGCACGGGNGTCAGGTGGTTACCTCAAAGCCCGACCTTTGTGGGACAAGGCTCAGAATGAC 5 0 5' arm Hordeum_vulgare mirnest 100 tae-MIR1117 0.00001 -25.1 .............((((((((((((((.(((...))).))))))))))))))............ (-25.1)