mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTATTTTGGGACGGAGGGAAT TCCCTCCGTCCCAAAATAAGT AAATATACTCCCTCCGTCCCAAAATAAGTGTCTTGAGCTTAGTACAACTTTGTACTAGAGCTAGTATAAAGTTGAGACATTTATTTTGGGACGGAGGGAATACTAC CTGGCCCAAACCTTTTCTTTAAACGGCATGAACATTCTGTAAACGTGTGACGTGACTCTTTACAAAGATTCAGCCAAAGCAATGTTTGAAATATACTCCCTCCGTCCCAAAATAAGTGTCTTGAGCTTAGTACAACTTTGTACTAGAGCTAGTATAAAGTTGAGACATTTATTTTGGGACGGAGGGAATACTACTGTATATGTTTTGAATATTTCGATATAAAAAAGCAGAGCAAATCAACTTGAGAAAAAAAAAAAGAGAGAAACTTGTTAGGTAGGCGTGAAGCGTTGGTGCATGCGCGCATCCGGTAGGACGGCCCATGTATCTATCCCTTGTAGGCTCGCGTGAAGCGAGGCATATCCCTATCCCCTTCCCAGAAGGAAAAAAGAAAAGAAGAAAAAAGATCGCTCTATACGGTGCGGCGTTGCGCTTCAAACGCCAAGAGCCGCCGTCCCAGTCCAAAGCGTAACGGGCTCTTCTAGTTCTTCATCTTCTCCCCC 1 0 3' arm Hordeum_vulgare mirnest MIR1122 2e-36 osa-MIR1862e 0.000005 -51.6 .....((.(((((((((((((((((((((((((...........(((((((((((((....)))))))))))))))))))))))))))))))))))))).)).... (-51.6)