mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTTCCAAAATA TTTTGGGACGGAGGGAGTAGA CCTTTGCCTTGTACTCCCTCCGTTCCAAAATAAGTGTCTCAACTTTGTACTAGTTCTAGTACAAAGTTGTACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGAGTAGAATCTAAAC TTCGGCACGAGGCTGAAGTGAGAGATGGCAGGGTTCTTCAGCACCTGTGCTGCTTCTGATCACTATTGTTTGCAGCTCAGATCTGGATCAGCTCAGCATGAACTGACCAGACCAAACAAGTACAGAAGAAGAAGCATGATCAGGTGCTGCAGCACAGCAAAGGGGAAGGCAAGAAGGGACTACTACGAGGTGCTTGGAGTAGCAACTCATTCCACGCCTCATGAGATCAAGGAAGCTTACAGGAAACTCCAGAAGCAACACCATCCTGATATCGCTGGCGACAAGGTGCGCATCCATCTGCCTGTTCTTTGATTTACTCTTCTTTTCTGGGTCCTGTTTTTGGTTCATTAGAAACTCAGGTGAAATGTAAAAAACTGTGACAAGGAGCAACTGTTTTGTCGTGTTAGATATCAGATCCGTTCTTTCCCTTTGCCTTGTACTCCCTCCGTTCCAAAATAAGTGTCTCAACTTTGTACTAGTTCTAGTACAAAGTTGTACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGAGTAGAATCTAAACTGTGAAGTGGTATTTTTCTGTTCA 0 0 5' arm Hordeum_vulgare mirnest MIR1122 3e-39 far-MIR1122 0.00000002 -55.1 ...........((((((((((((((((((((((.((((((((((((((((((....))))))))))).((.....)).))))))).)))))))))))))))))))))).......... (-55.1)