mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGGACAGGGGGAGTAGA TACTCCCTCCATCCCAAAATA CAATGTACTCCCTCCATCCCAAAATAAGTGACGCAAATTTAGTACTAAGTTAGTACAAATATAATACTAAAGCAGCGACATTTATTTTGGGACAGGGGGAGTAGAAC TTTTTTTTTTTTTTTTTTTTTACAGTACACAAACACTAGGCGATTTAGCCCAGCGGGAGAACTTAAGAGAGATTTAGGTACAGCCTTTATTTGGTTATACAGAACAAAATACATATACATAACTACCTTCCTAAGACAAGAAAGAATGCAATGTACTCCCTCCATCCCAAAATAAGTGACGCAAATTTAGTACTAAGTTAGTACAAATATAATACTAAAGCAGCGACATTTATTTTGGGACAGGGGGAGTAGAACATAATGTCAACTCAACTAGATACATACTTCACGGATCTAGATGTGAACTTTTCTACAGAGAACAGAGATTTGACAGGGGGGTGACCCGGAACCGGGAGGGACAAGTTGCTAAATGTCAACCTGACGGTCTTTGGTAGACATGCTTTGTTCTAGGATCAACGATTATGCCCTTTCCCCCGTTCACTTCGAGATCATGCTGAAAGACAAAATCTGGAATTGTTAGTTGTTCCCGTGGCACGTATCTGAACAGCTGCATAAGTCTGTCGACATAGACAACTTTCTTCCAGACATCTCCATCAACAAGAAGCTGCAACGGCCCAAAATAGCCGNTCTCAATCCCAAGCGTTTGGGGTGGGAGTACAATATATAGCCTGGAAAGNTTTCCGCCGGAATGCCTTTAC 4 0 3' arm Hordeum_vulgare mirnest MIR1122 3e-35 100 -41.8 .....(((((((((..((((((((((((((.(((...(((((((.((.(((......))).)).)))))))...))).))))))))))))))..))))))))).... (-41.8)