mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTCCGTCCCAAAGTAAGTGT ACTTGTTTAGGACGGAGGGA AGGAAATACTCACTCCGTCCCAAAGTAAGTGTTGTAAATTTAGTACTAATGAGTGACACTTGTTTAGGACGGAGGGAGCATATAT TTTAACGAATGATGGCCCTGATACAGCAAGAAGAGGGATTTCACTGCCATTGATTGCGCCCGCATGACAAGTACAACGACTACCTAGTACAAGCCTCAGGCGAAATAATCTTATCCAGAACAATCGTTGAACATTTCTCCGAGAATCACGTTAAGGAAATACTCACTCCGTCCCAAAGTAAGTGTTGTAAATTTAGTACTAATGAGTGACACTTGTTTAGGACGGAGGGAGCATATATACATGGCAAAACCAAATTCCTGCTTTCTTAGTTCAATATAAGAGCTCGCCAGCATTATCTTTCTCCAGCATGCTTCGTAGTTGTACATGAGACATACGTCAAGTTTCTCACTGTGAGCCCAGCAATGGACAACTGCTGTTGGCTTGAATGGATAATCTGCACGCACCACGGTTTAGCTTAAGATGGTAAGGTACTATGTGATTGGATTACATAGAAGCCATGCTATGAAAATCTGAAACAGTTGGTAGCTTTGAATTCACCGACATAAGACGCAGGTAGGGTGAACACTAAAGCCCTGGACGGTAACCATGCAGCTCCATGAATGGGGGAGCGGGGCGCTCCTGGCGGGCTGCACGGGATGGGCTGTGTGGGACTCGCGGATCGGCACTGTGGAGTTTAACCCGGGGACAGGCCGTTCTGGTTTCTGGCCTGCTTGCCGGAATGTTTTTTGTCGTCGCGATTCCCGCGGACGCGGACGGCTGCGAAGAGAGCCCCGGCTTTCCACTCGGCCACGCCA 2 1 5' arm Hordeum_vulgare mirnest MIR1122 0.0000003 100 -24.8 .....((.(((.((((((((.(((.((((((((....(((((.......)))))))))))))))).)))))))).))).)).... (-24.8)