mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGAGCTTCTCGAAGATGTCG TTGTAGCGGGCGAGCTTGGCG GTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG TTTTTTTTTTTTTTTTTTAAACCAGAGGAAAAACTATCGTTAATTCAGAAATTAAGGTTGCAAAGCAAGTCACATATCAGGAGCTCCATATTTCTATTCCAGATTAGAGCTTCCCAAGAGCATCACTGCATAAATACATCCAACAAATTTCATCCATCACTAATTCAGACAAACGAGTGAAACACCAAGGTAACTACGAGCACTGCCAGACACTAGCGATCTAAGAGGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGAGGACGAGGCGGACGGAGGTTTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGAACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTCTTCTTGCCCTTCTTCCGGCCCTTCTTCTCGCCGCCCTCCTTGGAGGCGGTCTTGCCCGCCGGCAGACGCTTCTCGGGNCTTGGGGCTTCTTCCGCCGCCGGGGCCTTCTCGGCCCTTCTCCCGTGGTCGGGCTCCTCCTCCCGCGGGGGCTTCT 4 2 3' arm Hordeum_vulgare mirnest 100 100 -20.5 ...(((.((((.......((((.(((((((.((((...)))).))))))))))))))).))).......... (-20.5)