mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATGGGACGGAGGGAGTATCT CTACTTCCTCCGTCCTCTTAT GTTAAAAGCTACTTCCTCCGTCCTCTTATATTATGGGACGGAGGGAGTATCTAATAC GAAATGGGTATCTATCACTTTGATTGTCTTGCATCTGCATAACTACTCCGTAACTGACACTACAAGTTACACAAACCACACATGCACACACCACACAAGGCACAAGAGCAACATCGTAACCATCAGCTGCACACTATCAAGAAAACCAAACCTCACGGGCTCTTCCCTCCCAAACATGTTAAAAGCTACTTCCTCCGTCCTCTTATATTATGGGACGGAGGGAGTATCTAATACTCACATTAGCAAGCGCACAATGCTCTGAGTTGAACGCCCTGATAGACTACATCCACAAGTCATAAGCGACATCTTCTAACAGTTCATCCAGTATGAATTCCCATATATCCACAACAGTCTCCTCGCTTTCCGACCGGAGACTCATCCAAGTCCCCTCTTCCAGATCCACACTAACTAGCTGGTTCAATGTGCTTGGAA 4 0 3' arm Hordeum_vulgare mirnest MIR1122 0.00000001 tae-MIR1120 0.00000004 -25.7 ......((.(((((((((((((((..........))))))))))))))).))..... (-25.7)