mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTATTTTGGGACGGAGGGAAT TCCCTTCATTCCAAATTAAGT CAAATGATGTACTCCCTTCATTCCAAATTAAGTGACCCAAATTTAGAACTAAGTTAGTACAAATATAGTACTAAAGCAACGGCACTTATTTTGGGACGGAGGGAATATAAACCGA AAAATGTCAAAATGGTGAAAAGGGGGAAAGCAAATGATGTACTCCCTTCATTCCAAATTAAGTGACCCAAATTTAGAACTAAGTTAGTACAAATATAGTACTAAAGCAACGGCACTTATTTTGGGACGGAGGGAATATAAACCGAACCAATGTGTTGCCTGTAGCTGATATACATACTAGAGCTAGGTAGCTCAACATAAGGTGTACTCGCAATCAAGCAAACGAGTGAGGATCTCCTGGCAGCTTGGGCGCTTNTCCGGTTCTGTCCAGCAATCTGCTATCAAGCTACCCAGAGGTCCATCTGGTATTTCCAATCTTGCCCCTTCGTTCGCAACAGAGTAAACAACCTGAACTGGCGGCTTTCCTGCCCAGGGCCTACTCAGAGTGCAAAGCTCCCACATGATAACTCCTAGGCTGAAGATATCACACTTTTCTGTAAATGGTTCGTTACGAATAAGCTCAGGAGCCATCCACTCTGGAGTGCCTGCAGATGAGTTGTCACTCATTGCAGAATTCGACAATAACCGAGAGAGCCCAAAATCACATAACTTGACTGT 3 0 3' arm Hordeum_vulgare_subsp._spontaneum mirnest MIR1122 1e-22 osa-MIR1862c 0.00009 -36.3 .......((((.(((((((.(((((((.((((((.((....(((((.((((.(((......))).)))).))))).....)))))))).))))))).))))))).))))...... (-36.3)