mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCCAAAAATA TTTTGGGATGAAGGGAGTAGT CGACTAGCAAATACTCCCTCCGTCCAAAAATAACTGTATCAAGCTTAAAACAATTTTATACTAAAGCTAGCACAAAGTTGACACACTTATTTTGGGATGAAGGGAGTAGTACTCTCTC GGTTCCTAACATCTGCATTCCACTACTACACGAGNAAAAGGCCGACTAGCAAATACTCCCTCCGTCCAAAAATAACTGTATCAAGCTTAAAACAATTTTATACTAAAGCTAGCACAAAGTTGACACACTTATTTTGGGATGAAGGGAGTAGTACTCTCTCGGTAAAGAAATATAAAAGCGCTACTAGCACATTTTTTTCAGGAGTACTCCGTAGTACTCTCTCGATTCAGTTGTTTGTTGAAATCTTGAAATCATCCAGCAAGTCAGCAATTGCTGCCGATGAGGATCCACCCATCTCCAGCGCATTGGCAGCAATCTCTTTCGCCATCGTCATCCTCTGCCTGATCTCCTTCCCTTGCTCAGACTCCATGACCAGTCTCACCTTCGCCTCTACCTCCTCCGCTTTCACCATCACCTCGTCGTAGCCGTTCATGGCCACCCCAAGCTTCATCTCCTCCACGACGAACACCTTGTTCATCCTCTGCTCCGCGTACATGGGCCAGCACACCATGGGCACCCCGG 2 0 5' arm Hordeum_vulgare_subsp._spontaneum mirnest MIR1122 2e-18 100 -30.9 ...........((((((((.(((((.(((((((.(((.((((((((.................)))))..........))).))).))))))).))))).)))))))).......... (-30.9)