mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCTCCCT CAGAAGAGGAGAAAGGAGGA AGTTTTGAAACACTGAGGAGAGCAGAAGAGGAGAAAGGAGGAGCAATAAGAAAACCTGCTATGAACAAAGCATGGAAACAAGAAGAAGATAGGTGCTGTTGTGTATTGTTACACAGAAGCTCAAAGGCGTGAGCTTCGTCATCAAGTTCTTACCTTCGACTACTTTGCTTATAATCTCCCTCTTCCTCTTCCTCTCCCTCTCCCTCACCCTCATCATC TGATCGAAGAAGATAAGAAGACTGAAGGAGTTTTGAAACACTGAGGAGAGCAGAAGAGGAGAAAGGAGGAGCAATAAGAAAACCTGCTATGAACAAAGCATGGAAACAAGAAGAAGATAGGTGCTGTTGTGTATTGTTACACAGAAGCTCAAAGGCGTGAGCTTCGTCATCAAGTTCTTACCTTCGACTACTTTGCTTATAATCTCCCTCTTCCTCTTCCTCTCCCTCTCCCTCACCCTCATCATCACCTTGTGCTACCCTTTGGTTCTGGCTTTGGTGTTTTTCATAAGCAGTTTCCTAGCTATATGTCAGGAGAATACAATCACATACCAATGTTTTGACTATGGAAGTATGATGGATCCTGAACCGAATAGGTGTAGAAGAACCGATGGAAAGAAATGGAGGTGCAGCTAGAACACAGCACCTTATCATAAGTATTGTGAACGACACGTGCACAGAGGCCGGAACCGTTCAAGAAAGCCTGTGGAAACATCCAAAGTTGTTAACTCAAATTCGATAA 4 1 3' arm Arachis_ipaensis mirnest 100 100 -55.2 .(((....)))..(((((((((.(((.((((((.((((.((((..(((((.(((..((((........))))((....))((..((((.((((.(((..((((((....))))))((((((((......)))))))).......))).)))).))))..))..))).)))))...)))).)))).)))))).)))..)))).)))))........... (-55.2)