mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCTTCCT GAGAAGGCCAAGGAGAAGGAG AACCAAAACATCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCGCAGGGAGCCTCATCGCACTGCTCCACAACTTCACATCTTCGCTCAATTCGATTGTTCCTCAATTTCATTGGAAATATATCAACTTCAATTTTTCATTTGATGCCGATACAAGGTGCCTCCTAAACAATCAAAAGCTGAGGTAGCGAAGAAGCAGAAGGTTGTGGAGGACAAAACCTTCGGTCTCAAGAACAAGAGCAAAGCGGTTCAGAAATATGTCCAGAATCTCAAGTCATCCGTGCAGCCCAAAACCGATCCCAAAATCGAAGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGTTAAATGA GGAACCTAACCAAAACATCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCGCAGGGAGCCTCATCGCACTGCTCCACAACTTCACATCTTCGCTCAATTCGATTGTTCCTCAATTTCATTGGAAATATATCAACTTCAATTTTTCATTTGATGCCGATACAAGGTGCCTCCTAAACAATCAAAAGCTGAGGTAGCGAAGAAGCAGAAGGTTGTGGAGGACAAAACCTTCGGTCTCAAGAACAAGAGCAAAGCGGTTCAGAAATATGTCCAGAATCTCAAGTCATCCGTGCAGCCCAAAACCGATCCCAAAATCGAAGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGTTAAATGATTTGTTCAAAATCGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCGAAGTCCATATTATGTGAGTTTTTTAAAGCGGGACAGTGTGCCAAGGGCTTCAAGTGCAAGTTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATATACAGCGATCAGCGTGATGACGAGGACACTATGGAGATTGGGATCAAGCCACCTTGGAGAAGTGGTGGAGTCAAAGAAAAA 5 0 5' arm Lotus_japonicus mirnest 100 100 -77.1 ......(((.((((.(((((...(((.((((((((((((((....((.(((.........((((...((((((((((....((((((((......(((..((((...........))))....))).((((((.(((((.(((.((((((.......))))..))......))).))))).))))))))))))))......))))))))))(((((..(((...))).((..((((....((...)).)))).))....))))).((........))....))))..))).....((((......))))..)).......))).))))))))))).)))...))))).)))))))...... (-77.1)