mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACTTGGCGCTGAGGTGTGT AATCCACACGCTGAGTCAGC AGGCAGCGTCGAAAAGTTTGCTGACTTGGCGCTGAGGTGTGTCCAAGAATCGGGCGATAGCAGGCCCACGATGAATGAGGTGGCGAAGGAGATCGAAAACATCATGGAATCGGCCGGTCTCAATCCACACGCTGAGTCAGCATCGACTTCGACAG GACGGTCTTACCGGGAGGAGTGGAATAAGGTTAGATTGGATGAGACGGCTTCGAATAGCACTCGGTGCAGCGAGAGGGGTGCAATATCTGCATGACTTAGCCAATCCTCCGATAATTCACAGAGATATTAAATCGAACAATATCTTGCTGGACGAACGGTTGAATGCAAAAGTAGCAGATTTCGGTCTTTCTAAGCCTATGGGAGAACCCGAAAAGGGCTATGTTACCACTCAAGTTAAAGGCACAATGGGATATTTGGATCCCGAGTACTACATGACAAACCAGTTGACGGAAAAGAGCGACGTATACAGCTTCGGAGTTCTTCTATTCGAGATTTTAACCGCAAGAAGTCCAATAGTTAACGGTAAGTACATCGTTCGAGAAGTCAAAGAAGCAATGGACAGAACCAAGGTTCTCTACAACCTCCACGACATCCTCGACCCAATAGTAGCCGCCAACTCAGCACCAGGCAGCGTCGAAAAGTTTGCTGACTTGGCGCTGAGGTGTGTCCAAGAATCGGGCGATAGCAGGCCCACGATGAATGAGGTGGCGAAGGAGATCGAAAACATCATGGAATCGGCCGGTCTCAATCCACACGCTGAGTCAGCATCGACTTCGACAG 4 1 5' arm Mimulus_guttatus mirnest 100 100 -50.4 .......(((((..(((((((((((((((((.((.((..((.((.......((((........)))).((((..((((.((..(((......)))...)).))))...))))...))...))..)).)))))))))))))))..))))))))).. (-50.4)