mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTTCCAAAATG TTCATACGGAGGGAGTAGC TTAAGGTTAGTTACTCCCTCCGTTCCAAAATGTAGATCGTTTTGACTTTTCTATATTCATACGGAGGGAGTAGCATTCTACA ACCCATGAAAAGTACATTCAAAAGATAGAGCAAAGAATTTCATACAACAAATGCTAGCGAATTATTCAGTGAAAATTAAGGTTAGTTACTCCCTCCGTTCCAAAATGTAGATCGTTTTGACTTTTCTATATTCATACGGAGGGAGTAGCATTCTACACAGCTCAGATGTTCCAACTCATTCAATCAGCTGAGGGATGAAATGATACATCTCAAAGCTAATTCCAAATTCTGCTGCTTGTATACAGAGAACTGAATTTGATCAACCGATCCCCATATCCCATTCATTTCCTAGCAACAAGCAGCTCTCTTTTGAGTATTGTCTGAAACTCCCATTGTTGTAGCAATGACTTCCGCTCCGAGACTTACGCACCATGACTCTGACCAACCACTAATGTGCCAATATGTCAGGGTGGAGACAACACCTTAAAAATGGCTTTTATCTTGGCAACACCACAGTGAAAATAGATCTTCAAGTTCACGGACAAGTACAAACAGAACAGCTGTGGCCTGCATAGTGCTTGCAGGGCTTCCATGTTTGCACCCC 3 2 5' arm Panicum_virgatum mirnest MIR1122 0.0003 tae-MIR1137 0.00006 -29.8 ...(((...((((((((((((((.....((((((((((.....))....))))))))...))))))))))))))..)))... (-29.8)