mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGAGCTTCTCGAAAATGTCG GCGTGCTTGGGGAGCTCCCCT CCTCGGAAACAGCGTGCTTGGGGAGCTCCCCTGGGAGGACAAGGCGTACGGAGGTCTGGATCTCCCGGGAGGGGATGGGGGGCTTCTTGTTGTAGCGGGCCAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAAATGTCGTTGATGAA GGCAGATCACATGGGGGGGGAAACCCCACCCCAATTTTTTTCGAGATAACAGTTCCTCTTACAAAATCCAACAAAAAGAGCAACCTAAACTACCAAAACCTAAAAGGAAGTGAACTTTGTGACGGCCTTGGGGCCCTCGGAAACAGCGTGCTTGGGGAGCTCCCCTGGGAGGACAAGGCGTACGGAGGTCTGGATCTCCCGGGAGGGGATGGGGGGCTTCTTGTTGTAGCGGGCCAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAAATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAAATGCCGATGTCCGGGTGCACCTGCTTGAGGACCTTGAAAATGTAAATC 4 0 3' arm Avena_barbata mirnest 100 100 -53.1 ..(((..(((.((((..(((((((((((.((.(((((......((..((((((((((...((((((.....)))).)).))))))).)))....))..((((...))))...))))).)).)))))))))))..)))).)))..))). (-53.1)