mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATAT ACGGTGAGAGATGATGTGAGG AAATGGATTGATACGGTGAGAGATGATGTGAGGGTTCTTTCGGATCTGAACAATGAGAGAGGGACCTTTATAGCATGGCAAACACTGGCTCAGGATAGAGGACAGTGGAGGGATCTTATTCACAGTTTGGTCGATACACACACCTGATCTTCGGATTGGAAACGTGGTCATCATCATCATCATCATATACCCTTTGT AGATTCGTGTCAAGCATGAGATTCCATCCATAGAGAATGTGATCCGTTACCACAGACTCAGGTGGCTGGGTCACGTGGCTAGACTAGATCCTGAAAGGCTACCAGTTCAGGTCCTTTTTGGATGGATAGAAGGGAAAAGGCCAATTGGCAGGCCCACAAAGAAATGGATTGATACGGTGAGAGATGATGTGAGGGTTCTTTCGGATCTGAACAATGAGAGAGGGACCTTTATAGCATGGCAAACACTGGCTCAGGATAGAGGACAGTGGAGGGATCTTATTCACAGTTTGGTCGATACACACACCTGATCTTCGGATTGGAAACGTGGTCATCATCATCATCATCATATACCCTTTGTCACCGCGTGCGTCACACGTGTCGAACGTCATTGTGCAGTCTAATCAGCCCTGATAGGCTTGAACACTGTACTTTGTGCTAATGTTGTTGTTCATTATAACTGAGTTGCAAAATACACTGCGTTTCTCATCCATCGTAAGTGGCATGTAAGGTTCATCAAAGCAAGGTTTACAAACCAAGGTTTAACAAAGCAAGGTTTATCAAAGCAAGAAGACAAGGAGGAGGAGGAATCTTATGACTCTGCTTATGTGGCATCCAGACAGCATCTCCGTTGCACTCCTCGTGAAGGAGTGCGTGTAATGCCGCTCAGACGCTTGT 2 2 3' arm Botryococcus_braunii mirnest 100 100 -45.5 (((.((....(((.(((((..((((((((((..((....(((...((((((..((((.((((..((((....((...))...(((((.(((......)))..)))))))))..)))).))))..)))))).))).)).(((..((((((....))))))....))).))).))))))).))))).))).)).))).. (-45.5)