mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCTGTAAAGAAATATAA ATATCACTATATGAAGGGAGT CACAGTAGTACTCCCTCTGTAAAGAAATATAAGAGCGTTTATATCACTATATGAAGGGAGTATCTCCCT CGATTTTTTTTTTTTTTTTTTGTAAAATCGTACACTAGGGCACAGTAGTACTCCCTCTGTAAAGAAATATAAGAGCGTTTATATCACTATATGAAGGGAGTATCTCCCTCACAATCGACAGGGAAAAAAAACATGTATACTAGGTGAAAAAAAACTAGTACTAACAATCATGTACGAGACTTGCGGATTTTCTCAAGTGCTTAGGGTCAAACGTCGAGGCCAACTACTCAAGCACATTGGCTCCTCAGCTTCACATTTCAAATCTTTAATCACAGGGGGGTGATCAGTTGACCTGACCTAGTGCTTCCTTCTACTTGGTGGCGGATCCCATGCCGCAGAGGGCGGCGGCGGCCTGGCGGGCGAAGTAGGTGAGGATGACGTCGGCGCCGGCTCGCCGCAGGCACATGAGCGACTCCATCATCACCTTCTCCTCGTCGATCATGTTCAGCGCCCCGCCGGCCTTGATCATCGAGTACTCGCCAGATACCTGGTATGCAGCAATTGGCAGTGCAGAATTATCCCGGAGAAGTCGGATGATATCCAAGTATGGCAATCCAGGTTTCACTAGAAGGATATCAGCTCCTTCGGCCTCATCTGCTGCAGTTTCTAGAAGGGCTTCCCTGTAGTTAGCTGGGTTCATCTGATAGGTTTTCTTGTCCCCAAATCGTGGATTTGAATCTAAAGCTTCTCGGAATGGCCCATAAAATGAACTGGCGTACTTTGCAGTATAGGACATGATGGAGACATCATTGAAACCCTCAGCATCCAAAGCAGAACGGATTGCTCCAACACGACCATCCATCATGTCA 4 0 5' arm Pseudoroegneria_spicata mirnest MIR1122 0.000000000000004 tae-MIR1121 0.0000000000002 -18.6 .......(((((((((.((((.((..(((((((....)))))))..)).)))).)))))))))...... (-18.6)