mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATGGGATGGAGGGAGTACAA TTACTTCCTTCGTCTCAATTG CATACTTAAAAGTTACTTCCTTCGTCTCAATTGCTAGATACAATCGTTTGAGCGTCAATTAACATGGGATGGAGGGAGTACAAAGCTAGAAC ACGCATTTTTNNTTTTTTTTTTTATAGAAGAGTAACACGTTGAAAAATTTGCTGCCTCACTACATGATAGAATAAAGACGCACATGCGTACATACTTAAAAGTTACTTCCTTCGTCTCAATTGCTAGATACAATCGTTTGAGCGTCAATTAACATGGGATGGAGGGAGTACAAAGCTAGAACAACCATCCTTTTCTGTAAAAGTCCGACTAAGAAGCGGAGACATCAGCGGTTGGTTAAATCGTGGCTTCATGCACTCAAACTCGTAGGAACAAACACACACGAACAAAAAGAAGTCAAAACAGATGGCGGCTAATATAATGATTTGCCAGAGATGGAGGGAAATTTTCTTCTTGCCTTCATGCCTTCAAATATGTCTCATGAGGACATTGTACACTTCACCATCCAGCTATTTAGGGTATAGCTCACATTTAAAACCTCCATCAATTCTCTTTTGAGTTATTTCTCTTTTTTCAAAACTTGCAGAACAGAATCTGGTGTTCTCCTTCACTTCAAAGGCCTAGTGAATTCCTTTTCTTTGATCCATGCAAATCTCAGAGAGCAGTTAACATTACATATCATGCTAGCAAAAAACCACGTAGCACTTCTATATCAGGAGGAATACATAAGCAATTCCCGGTTGGCCATTCACGTGCACATATATCAAACTGCGTTCAGATATGTGCAGGGGGGCCATGGGGTGCGATAGAGGCATAGAGCTGGGCCGCGGCGCAGCTTGTGGAGGGACGGCTTGGAGGGGCATCACGGCCGCAGCTTCAGCATATGGGGGAGTTGG 5 0 3' arm Pseudoroegneria_spicata mirnest 100 100 -23 .............((((((((((((((((..((((....((....))...))))..........))))))))))))))))............ (-23)