mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCAAGATGTTGGCATAGCTGT CGGCTGTGCTGACAAACTGCCATT TGACGGAGGGCGAGGAAATGGCAAGATGTTGGCATAGCTGTTTGGAGTTCTGGGTCGGCTGTGCTGACAAACTGCCATTTCCCGTTCACTCCTATTACAAC 5 1 5' arm Branchiostoma_floridae mirbase mir-31 2e-39 dre-mir-31 0.0000003 -51.4 ....((((.(((.((((((((((...(((..(((((((((((..(....)..)).)))))))))..)))...)))))))))))))...))))......... (-51.40)