mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCATCATCATCATCA ATGATCATTGGTGCCTTGAAC ATATACACAGAGTTGTCGCTATCATCGTCATCATCATCATCAACCGCGCATTAGATCAATATCAGCATGAGCATGAGCATGATGACGCATATCCATTTGCCGTGAACCTGTTGACCATATCAGGTTTTGGCTTGGAGGTTGCTGAGGAACAGGCGAAACCGTGTTGTTCTTATTGTTGTCTAGAGCTTGATGATCATTGGTGCCTTGAACAATTTCAGAAGCTTCTTC CCAGTATAAGATGTCTCCGGTACGGTGAACTTGGACCGGAGACTTTCAGTCAACGATTTCAAACGATGCTGTAGATCAAAAAATCCAAGCATACAAATTTTGAGATAAAGAAATCAAGAAACTCTGCAAATCTTCAGAGTCACAAAACCAAATAAGCTAGAGAGATTTGAGAGGTACACTAAATAAAAGTCATTCTTTGAACCTAACATTTCAACATACTTTGTTCAGAGGTTAGCTTATGTTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTAGATTGATTCCATGCCTTATATACACAGAGTTGTCGCTATCATCGTCATCATCATCATCAACCGCGCATTAGATCAATATCAGCATGAGCATGAGCATGATGACGCATATCCATTTGCCGTGAACCTGTTGACCATATCAGGTTTTGGCTTGGAGGTTGCTGAGGAACAGGCGAAACCGTGTTGTTCTTATTGTTGTCTAGAGCTTGATGATCATTGGTGCCTTGAACAATTTCAGAAGCTTCTTCTTCTCGTTTCTTGTTCTTGACCTTTGGAGCTGA 4 2 5' arm Thellungiella_halophila mirnest 100 100 -56.8 .........(((((((.....(((..(.(((((..((((((((..((...(((((.((((((((.((((........)))).))).(((..((((...(((..(((((((.((....)).))))))).))).))))...)))..(((((((((((....))).))))))))..)))))))))).))))))))))...))))))..))))))))))..((((...)))) (-56.8)