mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATTTCTTTACCGAGGGAGTA TTCCCTCTGGAAACAAATATA TAGACTAGTATTCCCTCTGGAAACAAATATAAGAGTGTTTAGAACACTATTTTAGTGATCTAAACGCTCTTACATTTCTTTACCGAGGGAGTAGATTTCT GCTACGCGGCCGGGTCGAGGTGGAGGCAGACGACGGTGAGCAGGAAAGACCACCGGGAGAAAGGGGACGAGACGGACGGCTTCTACGGCGGCATCAGGAAGCTCCAGACCAAAGACGAGATCTCAACGTGGCGGAGATTCTGGCCGGTGGACGTGCTCAGCTGAACATGGACATATATCTGCCGCTCCGTTGTACAGCTGCTTGCCGGTGGTCGCCGAGCTGCGGCGTTCCTCTGAAGAATGCACCCACCTGGTGGTGCTGCTGCTGCTGCCGCGCTTCTGAATGTTTTTGGTACTACTGGAAAATTCAGATGGGTACGCCGGATTCCAGAGTCCCAGCAGCAGTGAGAGGCAACGATAGGCTTGTATGTGAATGATGATGTACAGCTCTACCAAGTCTTCAGTTTGCACCGTGCTGCTGCTGGATCCTAGACTAGTATTCCCTCTGGAAACAAATATAAGAGTGTTTAGAACACTATTTTAGTGATCTAAACGCTCTTACATTTCTTTACCGAGGGAGTAGATTTCTGGTATAGACCGATGTCCAGTTGTATTTTTTCGCAGTCATTGTAGCCAGNTAGTAGTATATCCAGTTACGCGGGNTG 2 2 3' arm Triticum_turgidum_subsp._durum mirnest MIR1122 2e-18 tae-MIR1121 2e-17 -39.8 ........(((((((((.(((((.((((.((((((((((((((.(((((...))))).)))))))))))))).)))).))).)))))))))))....... (-39.8)