mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGATCCGTCTGAGCTTGGCT CCTGCTGAAGCTCAGAGGGCTCTGATT TGTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCCTCATC 2 5 3' arm Macaca_nemestrina mirbase mir-127 8e-36 mml-mir-127 3e-50 -39.8 ...(((..(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))..)))........ (-39.80)