mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGTGTGGAAATGCTTCTGC AGAAAACATTTCTGCACACAC AATCTAAAGAAAACATTTCTGCACACACACCAGACTATTGAAGCCAGTGTGTGGAAATGCTTCTGCTACATT 5 1 3' arm Macaca_nemestrina mirbase mir-147 3e-34 mml-mir-147a 2e-35 -17.45 .......((((..((((((..(((((....................)))))..)))))).))))........ (-17.45)