mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCCCTTTGTCATCCTTCGCCT GCAGGGACAGCAAAGGGGTGC TCACTGGCCATGTGACTTGTGGGCTTCCCTTTGTCATCCTTCGCCTAGGGCTCTGAGCAGGGCAGGGACAGCAAAGGGGTGCTCAGTTGTCACTTCCCACAGCACAGAG 3 1 5' arm Macaca_nemestrina mirbase mir-204 1e-44 mml-mir-211 6e-55 -46.4 ...(((((...(((((...(((((.(((((((((..(((((.((((...((.....)).)))))))))..))))))))).)))))...)))))........)).))).. (-46.40)