mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCTCTAAATA CGTAGGGACGGAGGGTAAGTATT TACACCGAACCTACTCCCTCCGTCTCTAAATAAGTGTCGTTCGTAGGGACGGAGGGTAAGTATTTTTATCTG TTTTTTTTTTTTTTTTTTACATTGAAGCACAGAAAAGCAAATGCAACTAGGCAATATGGAATGTACACCGAACCTACTCCCTCCGTCTCTAAATAAGTGTCGTTCGTAGGGACGGAGGGTAAGTATTTTTATCTGATATTTTCTCCTTGCTAAATTATACTGAACACAACTGTATAAGCTTTCGGGGTAAATAAACTATGGACAGGAAAA 4 2 5' arm Cenchrus_ciliaris mirnest MIR1122 0.00006 100 -23.6 ...........(((((((((((((((((...............)))))))))))))..)))).......... (-23.6)