mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCCACATGTCGGTGACTCAAT TGAGTCACTGACGTGGGTC TGAGCCTGCTCCTGAGTCACTGACGTGGGTCCGATCCCACATGTCGGTGACTCAATTACTGACTA TTTTTTTTTTTTTTTTTTGGCCAAAGAAGCGGACCTGCTCGCACGGTGCACCGAACACCCGGAACAGCCGCGTCAGCAGACGCGTCAATGTGTAGAAAGGGAAATAAAGCTCCTCTGCAGTAGTTGAGCCTGCTCCTGAGTCACTGACGTGGGTCCGATCCCACATGTCGGTGACTCAATTACTGACTAAAGTACTGTAGATGAACCGCTTCCAGAAAAGGGAAATAACCACGATTTGTGCAATAACGACGCGTGTTCCGCTAAACATCAGCCTTTCCCAGATGGATACCGCCGGCTATTTTTTTTCCCCCTAATGTGGCATCTGAATACGTACAGTACTGCTATTTCCTATCTGACTAACTATCTGTCAACCAGCTGCTGACCAGCCGGTCTTATTCCTCGCACATCTTTGGTGTTGGCGAGTGCGATAACGACCGCAGAATCAGAGATCAAATCAATTGTAGTAGAGCATAGCATGTCCTTCCATCGCCTTTGTGTGTCCGGATCCACGGATCCACCACCTACGACGGGCGCAGGGGCTGCTGCTGCGTGATGCAGTGGACGTTCCCGCCTCCCAGCACGATCTCCCGCGCGCCCTCCACCATCACCACCTCGCGGTCAGGGAACGCCTTCTGCAGAACCTTGTACGCCTCGTCGTCCCAGTGCTTGT 2 2 3' arm Cenchrus_ciliaris mirnest 100 100 -25.5 .(((....))).(((((((((((((((((......)))))..))))))))))))........... (-25.5)