mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGAGCTTCTCGAAGATATCA TTGTAGCGGGCGAGCTTGGCG TTGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATATCATTGATGAA TTTTTTTTTTTTTTTTTTATTAATAATAGAACAGGCACCATACCGTTCAAGATCCATTAGGGGGCAGCATATCAAAAGCACTAGCACAATTAACCAAACTAAATACTAGGAATCCATTTCCATCCAACAGTTCTGATGACAATATAATACTGCTACAATATAACATGGGAGCGAGCCAGTACTAGCCACCACACCCAACCAAACTTGGCGACACAAGCACGGCAACCTATCTAAGATGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCCGAGACGGCGTGCTTCGCGAGCTCCCCAGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGATGGTTGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATATCATTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTGGCCTTCTTCTTGCCCTTCTTGCCCTCGCCGTCCTTGCCGGCGCTGGACTTGCCCGCGGGGAGGCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGAGCCTTCTCGGCCGCGGGCTCCTCCTCCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGCGCCATCGATGCTGCGGCTAATTTGGGAGCGCGGCGCTGTGGGGATTTTTTGG 4 2 3' arm Cenchrus_ciliaris mirnest 100 100 -20.7 ......((.((.(((..((((.(((((((.((((...)))).)))))))))))...))).))..)).... (-20.7)