mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGATACATCCATATTTGGGC TGAAATATTACATGTATCTAGA CTAAATTGTTGTTGAAATATTACATGTATCTAGACGCTTTTTAAGAATAGATACATCCATATTTGGGCAAACTTGAG CAACACTATCTTTGTTTTCTATATGAAAAATTGCATCACAATTCTTAGGTAAACAAGGAAGCACATTAGTATACTACAACTTACATGTACATACTGCACTTTTACTGTGTCATCATACTTGAATACTACTCCCTCCGATCCTAAATTGTTGTTGAAATATTACATGTATCTAGACGCTTTTTAAGAATAGATACATCCATATTTGGGCAAACTTGAGTCAAGAATTTAGGATCAGAGGAAGTAACAAACTATACAAGATATTCTACAGTTTTGCAGACACTCTTTTGTAGTTTGTACTGAATGAATCAGCTAAGAATTCCATTCCTTAGAAACTGAACTGATAGGAGCAAACTAATTTTACTCTGCTGACCATAGTATCCATCTATACTTGCTTGCTCCTACATATTTTAGTATGAGTTTGGCCTCTCCACCTTCTACCCTTATCAGTTATCACTTTGTTGGGGCTCGTACAGAAAGGCTGGGTTGCCGTGATTTTTGTAAGAGTTGCATGTGCCAGGAAGGTCAAATTGTAGGTGTGTCATTTGTAGCTAAGGTAACTAGGTGCTACTGAAATGATAAATGTAATGGAACAACTTCTAGATCTACTCAAAGTAACAAATTTTGAGTTTTGCACTAAATTTTCTAGCTTTGCTTAGCAGTAGTTTTTTTTTTTGTATCTAGCTTATGCCACCTTATAGATGCTTTTCAGAACTGAAGCAGAAAGTAATGACCCAGCGATAGATCAACTTTCATTTACTGAATTGAGGGATCATTGCTTGCCCTT 3 1 3' arm Brachypodium_distachyon mirnest MIR1122 5e-30 bdi-MIR5183 6e-17 -15.5 ........(((((.((((((...(((((((((....(((...)))..)))))))))..)))))).)))))....... (-15.5)