mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGATACATCCATATTTGGAC CGAAATATTATATGTATCTAGA TGTCGAAATATTATATGTATCTAGACACTTTTAAGAATAGATACATCCATATTTGGAC GAGTTAACCGTAAAGAGCTACTCACTCCGATCCTAAATTGTTGTCGAAATATTATATGTATCTAGACACTTTTAAGAATAGATACATCCATATTTGGACT 3 1 3' arm Brachypodium_distachyon mirnest MIR1122 8e-16 bdi-MIR1135 0.0000000006 -13.1 .(((.((((((...(((((((((....((....))..)))))))))..)))))).))) (-13.1)