mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTCGTCCTCTTCCTCTTCCT AAAGAGAGAGAAGAAAGAGTCT AAGAGAGAAAAAGAAAGAGAGAGAAGAAAGAGTCTCATCAACATCAATCATCACCATCAGCTTCCTCAATCAACGTCAGCATCAGCATCACTACCATCAGCACCTGCGCCTGGATGTAAGTTAAGTTGGATGATCATCGTCGTCATAACGTCAACAACAAATCAGTAGTAATGGCAGGACTAATATACGAAATATTCACATCGTCATCGCTACTATCACTGGGCCTCTACCACACGATCTGCACGACGCGCAACTACCTGAAATCACCGCAATCGTACGGCGCCAAACCCTACCACCCACTCCCACTCCATCACAGCCACCACCGCCTCAAGCACCTCCAGCTGTACCTGATAATCGTCTGCCTCCTCATCTCCTTCGTCCACCAAATCCTAACCGCATCCGACTCCGACCCGCTCGTCAAGGGCCGGACCCCCGTCCACCTCTTCGCCTCCCTCCAGTCCGCACTCGTCCTCTTCCTCTTCCTCTTCCTCTCCCTCTCCCTC AAGAGAGAAAAAGAAAGAGAGAGAAGAAAGAGTCTCATCAACATCAATCATCACCATCAGCTTCCTCAATCAACGTCAGCATCAGCATCACTACCATCAGCACCTGCGCCTGGATGTAAGTTAAGTTGGATGATCATCGTCGTCATAACGTCAACAACAAATCAGTAGTAATGGCAGGACTAATATACGAAATATTCACATCGTCATCGCTACTATCACTGGGCCTCTACCACACGATCTGCACGACGCGCAACTACCTGAAATCACCGCAATCGTACGGCGCCAAACCCTACCACCCACTCCCACTCCATCACAGCCACCACCGCCTCAAGCACCTCCAGCTGTACCTGATAATCGTCTGCCTCCTCATCTCCTTCGTCCACCAAATCCTAACCGCATCCGACTCCGACCCGCTCGTCAAGGGCCGGACCCCCGTCCACCTCTTCGCCTCCCTCCAGTCCGCACTCGTCCTCTTCCTCTTCCTCTTCCTCTCCCTCTCCCTCCTCCTCTCCGAATCCACCTCCTTACTCCCTTTCCCCTCCGATCTCTTCTTCGCCCTCGCCGCCTCCCTCTTCTACCTCCACTACTCCGTCTCCTCATCCGCCGCCTCCGTCCAGACCTCCGATCTCCAAGCCAAATGCGACACCCTCTCCGGCCGCATCTCCGCCCTCGCCTCCTTCCTCTGCGTCGCCCTCGCTTGCAACTCCAGGCTCTTCGTCGCCGACGTTGCCCTCGGCGGGGCCCTCTGCCTCCAGGGACTCTGGGAGCTCCAGACTGGCCTCTCCCTTTACGTCGAGGCGTTCATCCCCCAGGGGTGTCATAAGCTGCTTGATGTGGTCAAGGGCGTCGAGGGGTCACCAAGTGTGATTTGGAGGAGTCTAAGTTGAGGGCCATGGCGATTTTGGATCCCTTGTTTTTGGTTCTGTTTTCCTTGTTTTTGTTATCGTTATGGGTTACCCCAGGCGCCATGGCCAAAACGTGCCTATCCAGGAATTGGGCCCCTAGGAGGCCCTGCCAAAGGTTCTGCCTCTGAAGCCAACCATCCCCTTTCAAATAAAGGCTTTGGCGGGTACCCCGGCCGGAAACCCCCAATTTTACCACCTTAATTTATCCCCCCCCCAAAAAAAAAAATGGGGAATTTTTTCCTTTTTTTTACACAAGTAAATGGTCCCTTTTTTTTTTCCTTTTTTTTTGAGGAAAACCTTTTGTCCCCTTCCCCCCCCCCGTGGGGGTTTATCCCCCCCGGCTTATAACCGCCTTTTCTCCCCCCCCCCCCGGGGGTTTTTTGAAGATTTTTCCTCCCC 4 1 3' arm Citrus_clementina mirnest 100 100 -68.069 ..(((((.((.((.(((((.((((.((..((((...((((......((.((((...(((((((....(((..(((((.(((...((.............))...))).....)))))..)))))))))).)))).))((((((((...(((..........(((((.(((.((((..(((.(((((.....)))))......)))...)))).))).)))))...........)))...)).)))))).((.................))....(((((((...........................................................))))))).))))..(((..(((.................................)))..)))....(((......((.(((((..((((....))))..))))).)).........)))...)))).)).)))).))))).)).)).))))).......... (-68.069)