mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCATAGCATCATGAGCAATCA ACTGCTCATGATGTTATAGCAT CTTTCTTAAGAGCATAGCATCATGAGCAATCAGCCTTGGATTTGAGCAGAGTGACTGCTCATGATGTTATAGCATCTCATGAA GAGAAATATAAATTACTTTGAACTCTTAATAAAAGTTAAGTTGAGAACTGAATGTAAACTACATTGAGATGTTAAGAAACATGCTATAATCATTCTATACATGAAAACAATCTATGAAAGGCCCAAGAGGGAAGTTCCCTGTAGTTCTCCCAAGTGGGTATCATAGAATGACATTCTTATAAGCCACACTTATTCCTTTCTTAAGAGCATAGCATCATGAGCAATCAGCCTTGGATTTGAGCAGAGTGACTGCTCATGATGTTATAGCATCTCATGAAGCACCAGTTCCACTTTCATATTCGGCTTATCAGAATCCGCTGCCAAGCGTCGGTGCCCAATAATCGGCACCATTGTCACTGCTAACCGGTAGAGTGCAGGATAGGGGCACAAGGCACAACCCTCTACTCCTCAAGTCCTTTGGTTCATCTTCAGCGTCCTACCATGGTCAAGATTATCATAGCATGAGGAAAGTTAGTGATAAATGGATAATTTGAACCTTTTGAACTTATGACTATACATTCTTGAATCCAATGGTTAAAGCAGGGACTTGTGATCCAGGACCCGAATTCGGGTC 1 1 5' arm Amborella_trichopoda mirnest 100 100 -27.2 ..(((...((((((((((((((((((((.(((..(((...........)))))).))))))))))))))).)).)))...))) (-27.2)