mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCACTGGGCAAAGTTTGTCGCA CGACAAACTCCGTCCAGAGGGTG AAGATGCGACAAACTCCGTCCAGAGGGTGTCCGATTTCAATGAACTCATCACTGGGCAAAGTTTGTCGCATAAA 3 1 3' arm Anopheles_gambiae mirbase mir-3 1e-33 aae-mir-309a-1 0.0000000009 -30.33 ...((((((((((((..((((((..((((.................)))).))))))..))))))))))))... (-30.33)