mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACATTTTGGGACGGAGGGAGT TCCCTCCGTTCTAAAAATACT CTACCATTATACTCCCTCCGTTCTAAAAATACTTACATTTTGGGACGGAGGGAGTAGATATTAT CAGCCTTGCAGAACCTTTGATTGTGGATAAGGAAGAGGATTTCCAGAACAAAAACTTGCTTGCTGATGAGAATAAGAGGTGCACTTCTGGACTTCTGGTACCGGCATTACTAATAATAATATCAGCGTACGTTCATGCCGTCTATCATTCAAAGTATACGTGTGCTCCGAGATGTAATATGGTTGGAAACAACTATAGCCAGAATCGCCTGGCAATACTCTCTGCCCTTAATAGTTTCCCTGTTGTGAGGGTCAGTGAGTGATAGAGCGCCATACACGGTATGCATGATTGCGTGCTAATATTTTTTTCACCCTGTGATGTAACATTTTCTGGGGTTCACATCGTTTATCATGATGACACTACCATTATACTCCCTCCGTTCTAAAAATACTTACATTTTGGGACGGAGGGAGTAGATATTATTAACGTGTGGGATAATAGGAGGGATGGTGAGACCTGC 3 0 3' arm Oryza_sativa mirnest MIR1122 0.00000000000005 tae-MIR1122 0.0002 -28.6 .........(((((((((((((((((((.........)))))))))))))))))))........ (-28.6)