mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATCAACATGAATATGGGAAA TTTCACATTCATATTGTCTAG ATTTTAGCATTTTTCACATTCATATTGTCTAGATTCATTAACATCAACATGAATATGGGAAATGTTAGAA TAGTTAGGAGTAGTATAAACGTATTTTTCAGTCAATAGCAGTAAAAACTTATTTTTCAATTAGGAGTGGTATATACTTATATTCAGTCAATACCAGTATATATTTTTTTAGATAGTAGTACATACTGAATTTTAGCTAGTACTACATACTTATCTTATCTTTTTTAGTTAGTAGTATATACTGATTTTTCGTTAGTAGTACATACTTATTTTTTAAGTTAGTAGATAGTATATGTACTCATTTTAATTAGTTCGTACAAGTATCTACTGTCTTTTTCAATTAGTAGCAGTATATACTTACTTTTACATAATATACATACTTTCTCTGTTTCACAATGTAAGTTATTTTAGCATTTTTCACATTCATATTGTCTAGATTCATTAACATCAACATGAATATGGGAAATGTTAGAATG 5 0 3' arm Oryza_sativa mirnest MIR1122 0.00000000000006 osa-MIR809h 0.00000000000001 -18.8 .(((((((((((((((.((((((.(((..(((.....)))....))).)))))).))))))))))))))) (-18.8)