mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGACGATGACGGTGGA CCTCGCCGTCGCCGGCGTCGCC CGTCGCCGTCTCCCTCGCCGTCGCCGGCGTCGCCGGAGATGACCAGAAGACGTGCCCCGGCGCGCCGACGATGACGGTGGAGTCGGCGTG GAGTACACCATTTCTTCTTCTTTTCAGTATATTTCTCTAGGAGTACTTCGTCGTGAACACCATGAACACTATTCCCCTTCCTCTCAGGCTACTCGTCGCCGTCTCCCTCGCCGTCGCCGGCGTCGCCGGAGATGACCAGAAGACGTGCCCCGGCGCGCCGACGATGACGGTGGAGTCGGCGTGCCGCAACGTGAGCGGGACGCAGGCGATGTACGACACGTGCAGGGACGCGCTCGCCGGCGTGGCGGANCCGCCGAGCGACCACGACGTGACCGCCTACGCGCTCCGCCGCGGCCCACGGCGCGGCGGCGCTCCGCGGAGGCCCACCCCGGGCGCNGCCATGAGGAGGTC 3 1 3' arm Oryza_sativa mirnest 100 100 -42.8 ...(((((.((((.(((.(((((.(((((.((((((....................))))))))))).))))).))).)))).))))).. (-42.8)