mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGAATGTCTCCATCATCAGG TGGTAATGCAGATCTCTCG ATTAGCCGCACTTGGTAATGCAGATCTCTCGGATGACAACATTGAAAGCGATGAAAATGATTCTGATCGTCGTTCAACATCATTTCTAAGATTTGGTCGAGGAATGTCTCCATCATCAGGTGCATTCCT TTTTTACAACTTACCAAGAGATATCCTTTCTTTTCATCATCCATTAATATTCATGTATCTATTCACCATTCTTTCGACGCTTCTTTGTCTCCATATGATAACGATTGCATCAAGTGAATCGACTGAAGTGAATTCAAATCAACCAGTCAACTATCTTCTTCAATCCGAATTAGCCGCACTTGGTAATGCAGATCTCTCGGATGACAACATTGAAAGCGATGAAAATGATTCTGATCGTCGTTCAACATCATTTCTAAGATTTGGTCGAGGAATGTCTCCATCATCAGGTGCATTCCTTCGATTCGGTCGACAAATCTCACCATCATCAGGTTCATTTCTTCGATTTGGTCGACAAGTTTCACCCACATCA 3 2 3' arm Oryza_sativa mirnest 100 100 -33.2 .......(((((((((.(((.((((.((((((....(((..(((.(((.((((..((((((.......))))))...)))).))).)))...))).))))))...)))).))).)))))))))...... (-33.2)