mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTGGCTTTCTTGCAAGTGT ACTTGTGTTTTGGCTGCTGCT GAGGTGCAGAATACTTGTGTTTTGGCTGCTGCTGTTTGGTTGTGGCTTTCTTGCAAGTGTTCGAGCTAT CAAGCATTCCGCTCGCGCAAGTGCGGCGCTTCGGGGCAAAGTGCAAGGCAGAGGCTTGGCACTTCTTGCCAGTTTTGACTTATCGCAGTAGTAGGGGAGGTGCAGAATACTTGTGTTTTGGCTGCTGCTGTTTGGTTGTGGCTTTCTTGCAAGTGTTCGAGCTATGCAGCTTTAGAATAAAAGCCATCCTTTTACAGGCTTGCAATAGGGTTTGAGCAACAACTGCTATCGCCTTTCCCAGAGGTCCATGTTGTGATGATGGCCTTTTTTCTGTACATAATCTTTTTATTTTCTTCTTTTTTTTCTTTTCTATTAGACATGATTGCTTTAAGGAAGTTGGGGTGATCAGCCTGCCCAGTCATTGGCCCCCCATTCTTCCACTCATGATATGCATTCAAAAATGTCATTCAAATAAAACCATTAAAAAAAAAGGATTTCCTGATACG 5 0 3' arm Oryza_sativa mirnest 100 tae-MIR444b 0.0007 -26.2 ..(((...(((((((((((....((((((.(((....))).))))))....)))))))))))..))).. (-26.2)