mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGATGTATCACATCTAGTTT ACCAGATATGATATATTCTAG ATCTAGGACCAGATATGATATATTCTAGTACGATAAATCTAGATATATGTATGTACTGATTTGTAGTACTAGGATGTATCACATCTAGTTTTTTA TGCTGAACCTGATGGCGTTCGAGCAGTCGGCGGCGAAGGCGGAGGCGCGCGACGTGTCGGCGTACGTGTCGTTCATGGCGAAGATGGTGCAGTCGGCGGAGGACGCCGGGGCGCTGGCGGCGGCGGAGGTGGTGGCGGTGGTGCACGGGAACGGCGGCGGCGAGGGCAAGGAGGAGGTGGTGAGGCTGTTCCGGCAGGTCGGGGCGGCGAGCGGCGAGGTGGAGCTGGAGCGGAGCTACCTGGGAGGGATGGTGGTGGAGCTCCGGGAGAGGAGCCGGCACCCGCTGTTCATGATGTGGGCGGACGTGAAGCGCAACTACTTCACGGTGCCATGGGCGGTGGTCGCCGAGTTCGTCGCCTTCGTCACCTTCGTCTCCACCATTGTCCAGATGTACTCCTCCTTCAAGCAGAAAGGAGGATGATCTCGTCCAGACCGACCGCCATGGAATTAATCCATCGATACTCCCACCGTCCCATAAAAAACCGAATCTAGGACCAGATATGATATATTCTAGTACGATAAATCTAGATATATGTATGTACTGATTTGTAGTACTAGGATGTATCACATCTAGTTTTTTATGGGACGGATAGAGTACGCAAA 2 0 3' arm Oryza_sativa mirnest MIR1122 0.000000000000001 100 -32.6 .....((((.((((.((((((((((((((((.(((((((...((((....))))...))))))).)))))))))))))))).)))).)))).... (-32.6)