mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAGA TGCTTTTCCACAGCTTTCTTGAACTTCTTTCGTATCTTAAATCTGTTTTCAAGATTAAAAGTCCTAGAAGCTCAAGAAAGCTGTGGGAGAATA 1 0 5' arm Medicago_truncatula mirbase MIR396 1e-46 gma-MIR396d 0.00000000000008 -38.2 ...(((((((((((((((((((.(((((.......(((.(((((.......)))))..)))....))))).)))))))))))))))))))... (-38.20)