mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGAAGATTTGCCCTG GGGGAAATCTCTTTTGGCAGA AATGATAGGGGAAATCTCTTTTGGCAGAGAGGAGTAGCTAGAGAGCTTGAACATGCTTGCTTCTAGTTTGCCAAAGAAGATTTGCCCTGCCATT 3 0 3' arm Medicago_truncatula mirbase mir-399 3e-47 mtr-MIR399i 0.00000000000008 -39.19 ((((.(((((.((((((..(((((((((.(((((((((................)).)))))))..)))))))))..)))))).))))).)))) (-39.19)