mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAGATTTTCTAGCATTGTCT ACAATATTAAAAAGTTTTATA AGTACTAAAATACTTTATCTGTTTTATATTATAAGATTTTCTAGCATTGTCTACATTCATATATAGGTGCCTAGATTCATTAACATCTATATGAATGTGGACAATATTAAAAAGTTTTATAACCTAAAACGGAGGTAGTATATTTCATT GACAAAGCTGGGTACCGGGCCCCCCCTCGAGTTTTTTTTCTTTTTTTTGGCTTAAGTTTGTTTATTTAACCATATAAACACAACATACATACCCAATCAATCACCATAGGCTTCAACTTCATGTGGCCCGACAAGTTTTGTTCCATTTGTGACAGGACACAGGTTCCATTTTAGCCTTGTAACTTTGTCACCCACTCTATCACCATCATTCATCAAACTTTGAATGGATAAACTACTGGTCTGATTTGAGATTTGTACGTAGTACTAAAATACTTTATCTGTTTTATATTATAAGATTTTCTAGCATTGTCTACATTCATATATAGGTGCCTAGATTCATTAACATCTATATGAATGTGGACAATATTAAAAAGTTTTATAACCTAAAACGGAGGTAGTATATTTCATTCATCTAAAATCATTTATATTTTGAGGTGGACGAAGCAATTCTAAATCACCCCCAGCTGGATCGATCGATCTGCCTCTTAACCGACACGGGCAGAATCGCATCACGGGCGCGCTGGCACCGGCACCGGCACGGCCTTGAGCGGCGTGACCATGTTGAGCGACGTGCCGAACCGGCCCCTGACGTCGACGTCGCACGGCCGCATCCCGCCGGGGAGCCGCCACTCGAACGCGTGGAGCAGCGACGCCAACACCAGCGTCACCACCCTCGTCGCCATCGGCGTCCCCGGGCACGCCCTCCTCCCCGCCCCGAACGGCATGAACTCCAGCATCTCGCCGCCGCGGAACGACCCGCCGGCCGCGACGAAGCGCTCCGGCTCGAACTCCTCCGGGCGAGGCCACGACGCCGGGTCGCGCATGATGGACCACACGTTGACGATCACCTTAGTGCCCCTGGGCACCGCGTAGCCGCCGACCGCGGCGCCGTCGGCGACGGCCTCGTGCGGCATCAGCAGCGGGCTCGGCGGGTGCAGCCGCATGGTCTCCATCACCACGGCGCTCAGGTACGGCAGCCTGCCGATGTCCGACTCGTCCGGGTGCGGCTTCGCGCCCAGCGCGTCGCGCAGCTCGGCGCGCGCCCT 2 0 5' arm Oryza_sativa mirnest MIR1122 7e-22 osa-MIR819a 4e-23 -45.3 .........(((((...(((((((((..((((((((((((.(((.((((((((((((((((..((((((..............)))))))))))))))))))))).))).))))))))))))..)))))))))...)))))........ (-45.3)