mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGAGTTGCCCTG GGGCACCTCTTTCTTGGCAGG ATCAATCATAGGGCACCTCTTTCTTGGCAGGCACTGGCTCCTATATATGAATATACATAGCTTAGCTGCAGTAAAAAGATGTGACTTGCCAAAGGAGAGTTGCCCTGTGACTGCTTC 3 0 3' arm Vitis_vinifera mirbase mir-399 0.000000002 csi-MIR399d 0.0000000001 -48.22 ..((.((((((((((.(((((..(((((((((((..((..(((..((((......))))...)))..))...........))).))))))))..))))).)))))))))).)).... (-48.22)