mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATCAATATGAATATGAGAAA TCCCACATTCATATTTATGTT TTTATGTAGTAGATTCATTAACATCAATATGAATATGAGAAATGCTAGAAACATTTCCCACATTCATATTTATGTTAATGAATCTAGATAGATA CCTTTTTTCTGAACAACCATTTTCCTAACTCGTACAAAGTACTTCCTCCATTTCACAATGCCATTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTTATGTAGTAGATTCATTAACATCAATATGAATATGAGAAATGCTAGAAACATTTCCCACATTCATATTTATGTTAATGAATCTAGATAGATACATTAACATCAATATGAATATGAGAAATGCTAGAATGACTTACGTTGTGAACCGGAGGGAGTATATACACACAAGCCATTCGGAAGGTCCTGCTGAATCCTAAACCATCCGCAAGTACGGAGGAGGGTGTCAAGGCTGAAGGTCATACTCCGACATTAGAAAAAAATCGAGTACTAACAGAAAAGGTTCCAATAAGCACGCTGGATATTGCCCTTCAAAGTTCAAACCAACACTTCAGCATGGTTCTTCTTTCCTTGACCAGAACAAGTGTAGCGAAGAACAAAAACGCATTCAACAACAGGCAATCTGCATAAACTTATACATCATGTTTTCTTTGTTGCCCATTGAGAGGCACTCAGCATATGGTACATCATCCAAATTGCCGGTCAACAAGAAAACAAAACCCTCAACCTCGGCACACGCGACAGTGTCTTTCGTCCTACTATCTTCAAAGAATATATCTTGCACCGGACAAAACTATATCCTTCCACGTATAGGGAGCCTGACATTTATATCCTTCATGTTAGCATTTGATGTTGGTGTTAGTGTTCAGGCAGGCTCGAGACCATATCATGTCAACCAAGATTGGTTGATGTCCCACTCCCAAACAATGCATTGTCTGCTGTTCAAGCT 3 0 5' arm Oryza_sativa mirnest MIR1122 9e-17 osa-MIR809d 0.00000000000002 -32.6 .........(((((((((((((((.(((((((((.((.((((((.......)))))).)).))))))))).)))))))))))))))........ (-32.6)