mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCTCAAAATA TTTTGGGACGGAGGTAGTAGG ATTAGGAATTTACTCCCTCCGTCTCAAAATATAAGCATTTTTAGCCGTTGTCCAGATTCATAGCCAAAAGTTGTTATATTTTGGGACGGAGGTAGTAGGCAAAATA CCTTTTTTGAGACGAAAGTCAGACAAGATGATGAATTGACCCCCACCTGGTCCATCAGACCAAAGTGCAATTGCTTGCCTCTACAAAAACACAGCTGTACATGACCATCTGCCGGTTTATACAGGTCAAGACAATATAAATATACTGTGCACCTCTAAAGAAAAGAGGGTAGAAAAATATACACCATGCCACGGTTGTTGTGACGCCGTACTATTTCATATCTAACCACAAGATTAGGAATTTACTCCCTCCGTCTCAAAATATAAGCATTTTTAGCCGTTGTCCAGATTCATAGCCAAAAGTTGTTATATTTTGGGACGGAGGTAGTAGGCAAAATAATATTCAGTGCAAATACAACAACTAGCATTTTACATGTACTACTTGTAGTAAGTACCATGTCACGATCATTGTCTGGAGTTGCTTGGCTGGTCCTGCTGCTGCTGCTGCTGGTGGTTTAGCTTCTGGTACATTGCCATCATCCGGTTGTACGCCTCCATGCCGTTCGGTTGCTGTGCGTTTTGCTGCGCCGCTTGGGAGGCGAGGAAGGCGGAGAAGGCGTCGGAGGTGGCGGCGCCGGTGGGCTGCGGCGGTCGGTCGGCGGCGGCGGCGGAGGAGGAGGATGCGGCGGCGTCCCAGGAGACGGGGAGGAAAGGGGGCGTGTGCATATGCATGGGCGCGTATCCGCCGGCCTGGCCCATGTTCATCATGCTGAGGCCGATCTGAGCCATCTGGGCCATCTGGGCCATGACGGACATCTGCAGCTGTGGCATGGCCATGCCCATGGGCATCATCATGCTGCCCATCCGGCTCATCACCTGCACCTGCGCCTGCAGCTGCTTCAGGTAGTCGATCACCTCGTCAAGCAT 1 0 5' arm Oryza_sativa mirnest MIR1122 2e-18 osa-MIR1439 0.000000001 -33.9 ........((((((.(((((((((((((((((((..((((((.((.((...........)).)).))))))..))))))))))))))))))).))))))....... (-33.9)