mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTGCTCAAATGAGTGTTCCA GATAGTCATTTCCTGCAAAA GCTCTTGGTTTCTTGCTCAAATGAGTGTTCCACATCAACCTGGATAGTCATTTCCTGCAAAACCAGGTTTCT 3 4 5' arm Vitis_vinifera pmrd MIR828 1e-27 vvi-MIR828b 2e-35 -21 ...((((((((..(((..((((((.(((.(((........)))))).))))))...)))))))))))..... (-21.00)