mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGATCTTGATGCTGCTGCTA GAAGTATGCGTTTGAGTCCTA AGCTGCAGGTTGGGATCTTGATGCTGCTGCTAACGCGATTGAACCTGATGTAGTTTACACAAGGAGAGCTCACAAGAAGTATGCGTTTGAGTCCTATATCTGCC CACCCCATACGACCCAGACAAAATACAAACTGCTGATAAGCTTGTCATAGATGAGCTCACAAGCCTTTCAGAACTCAAACATACTTACAGAGAGAGAAATCCTAAGCCAGTGGCAGCATCACCACAAGATTCACGCTTGCTTTCTGAAATACAGGAGCAGCAGAACTTGTTAAAGACATACGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGAATAGAGATACTGAGATTATCCACTTACAGCAGCAAACCGATGAGGCCAAACATCGGAAAACAAAACTGGAGAAGAAATTGAAACAAAGGGGCTTACTTAACAAGGAGTCAGAGGAATCTGATGAAGAAGAGAGCTATTTCTCTGTTGAGCTGACACCAAGCTTGTTTACATCTACTGCTGATAATGCATACCAATCAATACATGAGTTCTCAAAGCCCTTGATCAACATGATGAAAGCTGCAGGTTGGGATCTTGATGCTGCTGCTAACGCGATTGAACCTGATGTAGTTTACACAAGGAGAGCTCACAAGAAGTATGCGTTTGAGTCCTATATCTGCCAGAGAATCTTCAGTGGTTTCCATCAAGAGAACTTCTCGATCGATGCTGCTAATGCCACTGTTTCCAATGAGGCTTTCTTCCATCAATTCCTCGCAGTACGAGCCATGGATCCTTTGGATGTATTGAGCCAAAACCCAGATTCAGTTTTCGGTAAGTTCTGCAGAAGCAAATACCTATTACTTGTGCACCCAAAGATGGAAGGTTCTTTCTTCGGCAATATGGATCAGAGAAAACTACGTCATGAGTGGCGGGCATCCAAGGACACCTTTCTATCAGGCATTTCTCNAGTTGGCGAAG 4 2 5' arm Triticum_aestivum mirnest 100 100 -23.8 ....((((((.(((.((..(((((((((.((...((...(...(((..((((...))))..))).).)).....)).)))).))))).)).)))...)))))). (-23.8)