mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCGCGCAGTGCCTCGTCCTCGA GAGTGCGAGGCGCTGCGGGGGCT TGTGTGCGCTGGAGTGCGAGGCGCTGCGGGGGCTGCTGCAGGAGCGCGCCGCGCAGTGCCTCGTCCTCGACTGCCGCT CGTCGAGCTACTTCTGTGCCCTGCCGTTCCGCGAGCTACAGCGCGTTGCTTCCCTGCGAGCCGAGCCGAACGGAGCCGAGCGGCGGGGCCATGGTGAACCTGCGGGTGTGTGCGCTGGAGTGCGAGGCGCTGCGGGGGCTGCTGCAGGAGCGCGCCGCGCAGTGCCTCGTCCTCGACTGCCGCTCCTTCTTCTCCTTCAACGCCGCGCACATCCGCGGCTCCTGCAACGTGCGCCTCAGCACTATCGTCCGCCGCCGCGCCAAGGGCGTGCTGGCCCTGGAGCACGTTGTCCCTAACGAAGAGCTCCGCAACCGGGCTTGCGCCAAGGGCAAATCCACAACCGTTGTGCTGCTGGACGAACCGCAANCGGCCCGAACCTNGGAGCTTGCCCAAAGCGCGAAAAGAACGCCTGCTTGCTTGGGCCCTCCNGGNAANCTTTNCAANAAAAGGCCCCCGGGAGGCCCNCNN 4 1 3' arm Gallus_gallus mirnest 100 gga-mir-3523 5e-39 -40.2 .(((.(((...(((.(((((((((((((..(((((((.....)))).))).))))))))))))).)))...)))))). (-40.2)